read_proc_reports: Read in report(s) generated by Matlab biomass estimation/kriging process

Read in report(s) from Matlab biomass estimation from a directory and calculate the total survey biomass estimate and biomass by age. Uses readxl

Usage

read_proc_reports(SurveyName, DirNameFile, sheet = NULL, hakeflag = 2, ...)

SurveyName: - name of survey
DirNameFile: excel file - contains paths and locations of files. Uses Export_dir as the directory that the exported files are in.
sheet: is an optional argument to denote which sheet of the DirNameFile want to use. This defaults to the first sheet if not set.
hakeflag:: adult hake (hakeflag=2), not filtering for hake (hakeflag=-1), age-0 hake (hakeflag=0), age-1 hake only(hakeflag=1), all hake (hakeflag=3), age-1+ (hakeflag=4). set to 1 if want age1+ numbers, set to 0 (or other number) if want age2+. Defaults to age2+

if (FALSE) { # \dontrun{
temp<-read_proc_reports(SurveyName, DirNameFile,sheet)
} # }