basic_abund_comp.R — basic_abund

Function to read in and compare abundance estimate from the various cases. Similar to the biomass version, but doesn't do the spatial comparison (no spatial abundance reports available).

Usage

basic_abund_comp(
  SurveyNamein,
  DirNameFilein,
  imagedirin,
  cases,
  hakeflagin,
  yearin,
  ...
)

Arguments

cases: - is the set of cases to be compared
hakeflagin: adult hake (hakeflag=2), not filtering for hake (hakeflag=-1), age-0 hake (hakeflag=0), age-1 hake only (hakeflag=1), all hake (hakeflag=3), age-1+ (hakeflag=4). Passing this although assuming this will be hakeflag=1
yearin: is the year that is being investigated
SurveyName: - name of survey
DirNameFile: excel file - contains paths and locations of files. Uses Export_dir as the directory that the exported files are in.
imagedir: - the directory for the images files to be placed in

Examples

 if (FALSE) { # \dontrun{
T<-basic_abund_comp(SurveyName,DirNameFile,imagedir,cases,hakeflagin,year)
} # }