abund_comp.R — abund_comp • FTRpack

Function to bring in and compare age2+ abundances

Usage

abund_comp(
  SurveyNamein,
  DirNameFilein,
  imagedirin,
  casesin,
  hakeflagin,
  yearin,
  ...
)

casesin: - is the set of cases to be compared
hakeflagin: adult hake (hakeflag=2), not filtering for hake (hakeflag=-1), age-0 hake (hakeflag=0), age-1 hake only (hakeflag=1), all hake (hakeflag=3), age-1+ (hakeflag=4). Passing this although assuming this will be hakeflag=1
SurveyName: - name of survey
DirNameFile: excel file - contains paths and locations of files. Uses Export_dir as the directory that the exported files are in.
imagedir: - the directory for the images files to be placed in
year: is the year that is being investigated

 if (FALSE) { # \dontrun{
aB2<-abund_comp(SurveyName,DirNameFile,imagedir, casesin=cases, hakeflagin,yearin=year)
} # }