Read_Spat_Unkriged_Reports_cross

helper function to read in spatial biomass at age reports from EchoPro. This version is different from Read_spat_unkriged_Reports because it allows you to read in an age-2+ estimate from an age-1+ estimation process. Will keep just the stratum name and total biomass (no at-age data)

Usage

Read_Spat_Unkriged_Reports_cross(
  repcases,
  year,
  projpathbase,
  estimflag = 4,
  hakeflag = 2
)

Arguments

repcases:

a list of cases (will correspond to subfolder names) of reports to read in.

year:

the year (used as a subfolder)

projpathbase:

the base path that the project is in

estimflag:

estimation method (age-2+ or age-1+ method). Age-1+ method is 4, age-2+ method is 2 (or any number other than 4)

hakeflag:

adult hake (hakeflag=2), not filtering for hake (hakeflag=-1), age-0 hake (hakeflag=0), age-1 hake only(hakeflag=1), all hake (hakeflag=3), age-1+ (hakeflag=4). set to 1 if want age1+ numbers, set to 0 (or other number) if want age2+. Defaults to age2+

Examples

 if (FALSE) { # \dontrun{
Blist<-Read_Spat_Unkriged_Reports_cross(repcases, year, projpathbase,estimflag,hakeflag)
} # }